atoma
run.atoma/atoma · 20 stars · TypeScript · AGPL-3.0
MCP server Start and follow atoma builds; read their runs, traces, agent registry and skill catalogue.
Install
The repo has no one-line install. Follow its README.
Published as
- Remote
https://atoma.run/mcpStreamable HTTP
From the server's entry in the official MCP Registry.
Configuration
| Name | Set as | What it is |
|---|---|---|
AuthorizationOptional · Secret | Header | Optional. "Bearer atoma_…", an API token minted in Settings for one organisation. Without it, the client signs in through OAuth. |
Files
atoma
Watch a request turn into finished work.
Ask for a drawing, a sound, a report, a data study, a proof or a piece of software. atoma coordinates AI agents to produce it, checks the result against what you asked for, and lets you inspect every step. The bounded decisions along the way, such as which agent takes a task or whether a plan is approved, are taken by TypeSafe's Jev.
Demo · Use cases · A run, step by step · Features · How it works · Self-host · Documentation
Warning
atoma is under active development. Organisations are designed to be isolated from one another (projects, workspaces, traces and previews), but the platform has not been independently audited and we cannot yet guarantee that isolation, or the absence of other security defects, under every condition. Do not include confidential, personal or otherwise sensitive data in your goals, uploaded files or generated applications, whether on atoma.run or on a self-hosted instance exposed to others. Use the hosted service to evaluate the product, not to process data you could not afford to see leak. See SECURITY.md to report a vulnerability.
Watch the demo
atoma-demo-2026-09-26.mp4
From a business need to a tool you can use
An operations team needs a dashboard. An agency needs a client demo. A product team needs an API prototype. atoma turns those requests into software: web applications, HTTP APIs, command-line tools and their technical documentation.
Start at atoma.run. The web console brings projects, AI execution, acceptance criteria, result previews, model choice and run history into one place. This repository contains the open-source engine and console for teams that want to inspect, extend or self-host them.
What could your team build?
These are example project briefs, not prebuilt industry integrations or customer deployment claims.
| Team or industry | Example project | What it helps you do |
|---|---|---|
| Agencies & consulting | An interactive client demo or project estimator | Turn a proposal into something a client can try |
| Retail & e-commerce | A sales dashboard from exported CSV files | Explore product performance and share a clear view with the team |
| Logistics & operations | An inventory viewer or shipment-status prototype using sample data | Test a workflow before connecting operational systems |
| SaaS & product teams | A web app prototype or HTTP JSON API | Explore a feature and hand working code to engineering |
| Data & engineering teams | A CSV-to-JSON CLI, validation utility or technical documentation | Package a repetitive task into a reusable tool |
For example:
Build a sales dashboard that lets me upload a CSV with date, product, region and revenue columns. Add filters, monthly totals and a chart by region. Include sample data and instructions to run it locally.
A run, step by step
- Open Projects → Talk to Atoma, or connect your existing agent through MCP from Settings. Describe the project you want to create or the change you want to make. The integrated assistant uses the saved project brief and latest run to prepare a proposal.
- Review the agent's proposal for a new or existing project, the run goal and optional acceptance criteria. In the integrated assistant, creation and run launch have separate confirmation buttons. Both use the existing MCP. Without criteria, the run drafts its own checklist from the goal.
- Follow the run as agents plan, write files, start servers and check their work, with the model, tokens and cost behind every step.
- Preview web results in a temporary, isolated environment, including a snapshot while the run is still building.
- Keep the deliverable, with its verification record, and publish it to a connected GitHub repository. The project's next run continues from it; a project imported from GitHub starts each run from its default branch.
Previews are review environments; deploying the generated application is a separate step. Project runs use the configured model accounts and consume model quota or incur API charges.
See what ran, what was checked, and where model usage went.
Filter the timeline to LLM calls: the model, tokens and cost behind each step.
Features
Acceptance criteria you approve before launch
A project run can carry up to twelve criteria, supplied through MCP or the
CLI (--criteria <file>). A line such as
GET /api/items is an HTTP check; any other line is judged by review. The host
stores the list before planning starts and nothing can change it afterwards.
The planner is told the user wrote it, and the final check is told which HTTP
checks were actually observed on servers the run itself started.
Without a list, the run drafts one from the goal with a single call to the cheapest model. A drafted list can only add to what the final check looks for; it can never make a run pass.
Finished work is never thrown away
A run that exhausts its budget after completing at least one phase, or whose result the final check refuses after one remediation attempt, is kept as incomplete rather than discarded — including when the deadline falls while its finished work is still being checked. Its finished phases stay in the workspace, and the console explains in plain language why it stopped and what to do next, with the technical reasons one click away. In a project created in atoma, the next run starts from that workspace and is told why the previous one stopped; a project imported from GitHub starts each run from its default branch, so unpublished changes are not carried over.
Choose the models, then compare them
Each tier (workers, supervisors, planners) takes its own model selector, of the
form <api|sub|own>:<vendor>:<model>, across Anthropic, OpenAI, Google
DeepMind, xAI, Meta, Mistral, Alibaba Qwen, DeepSeek, Moonshot, Z.ai and a
self-hosted Ollama: api: bills a key, sub: the host's Claude or ChatGPT subscription,
and own: the member's own ChatGPT account, whose available models Settings
lists, or their own Claude Code token (beta). The operator can delegate the host subscription to named members without
making them administrators. The offered models and their per-token prices are
one versioned file, src/core/modelCatalog.json, kept current with
npm run models -- refresh: prices are a dated history, so a vendor's change
applies from its day without re-pricing what came before.
Every run records the models it was pinned to and the models the provider actually served. A delivered or incomplete run of a project created in atoma can be rerun on other models through the API or MCP: same goal, same acceptance criteria, same starting workspace. The rerun sits beside the project's history, so you can compare cost, time and result; it never publishes and never seeds a later run.
Start from your repository, publish back to it
Install the GitHub App to import a repository into a project or create a new
one, then publish delivered results to it. A project's earlier deliverables,
including Markdown, CSV, PDF and Office documents, are indexed so later runs
can search them and cite exact passages. TypeScript/JavaScript sources also expose symbols and resolved local imports through Haystack; clients use atoma_run_search to inspect saved versions (scope and evaluation). See GitHub App setup.
Verification you can read
Supervisors check results with evidence the run produced: files, command exit codes, HTTP probes, and browser checks laid out at the viewport widths the goal asks for. They never replay shell commands a model wrote. Every verdict, retry and refusal is in the timeline, and the console is available in thirteen languages, on desktop and mobile.
For an existing static page, the host also replays browser checks recorded by earlier runs before editing begins and again before delivery. Regressions go to the final review, which distinguishes requested changes from lost behaviour. Read-only phases restore the files they changed, and workers read existing files before editing them. See inherited browser checks.
Jev handles bounded decisions
TypeSafe's Jev helps choose an agent or recipe, approve intermediate plans and results when the evidence permits it, and avoid learning equivalent recipes twice. It answers structured questions; the run's models still plan, write code and explain refusals. Uncertain or unavailable answers go back to those models, and final delivery acceptance stays independent of Jev.
The initial goal and starting repository guide the root tissue choice. Jev
selects a suitable registered L3; if the choice is uncertain or no tissue fits,
a bounded model call reuses one or requests a new capability. New tissue prompts
are authored by the platform's pinned L3 model using the platform's credentials.
The legacy run:build command also accepts analysis and explanation tasks.
Jev is enabled for every organisation when the host has TYPESAFE_API_KEY,
unless the operator sets ATOMA_JEV=0. Decision context, including task text
and evidence excerpts, is sent to TypeSafe as described in the
service terms.
The timeline records its decisions, latency and separate cost; a sample of
approvals is reviewed by the model for comparison. See the
architecture guide.
Adjust run limits without redeploying
Platform administrators can change run budgets, token and spend ceilings,
call timeouts and tool-iteration limits in Settings or with npm run settings.
Changes are recorded in the audit journal and apply to new runs. A token or
spend ceiling stops further model calls and preserves completed phases as an
incomplete run. See operating run limits.
Connect an existing agent through MCP
The console serves an HTTP MCP endpoint at https://<your-instance>/mcp.
Compatible clients such as Claude Code or Codex can create projects, draft run
goals from the conversation and repository context, start runs, pass acceptance
criteria, request reruns and read traces, costs and diagnostics. The Web console
also provides an integrated assistant for customers without an external agent,
and remains the place to review projects and results. Choose a personal subscription, organisation API key or configured platform API
connection; conversation usage is accounted separately from runs; see setup and limits.
Conversations can continue in either direction between Atoma and an MCP client.
Use Continue in Claude or another agent to copy the continuation prompt;
shared messages and proposals remain private to the same account and organisation.
One endpoint supports both MCP protocol revisions 2025-11-25 and 2026-07-28. OAuth clients can connect through browser consent, including clients identified by a metadata URL. Project run tasks survive a client reconnect, and results link to run resources that compatible clients can open or follow.
Fifty-eight tools. The visible subset depends on the caller's role. Compact
searchable menus, recorded progress and saved-file readers keep the workflow
inside the conversation. Versioned project briefs and client-confirmed decisions
are captured per run through atoma_project_context and atoma_project_context_update.
Model suggestions remain proposals until the client confirms them. Sequential
project runs can pause for a blocking client choice, receive an answer through
atoma_run_answer, and resume saved work through atoma_run_resume. atoma_run_review assembles bounded saved evidence before
client acceptance, without running tests or opening a preview. Clients can pause and resume validated work and compare
saved file inventories between runs. atoma_run_start accepts baseRunId to
iterate a specific saved version; status and readiness expose the accepted reference. Deliveries await client testing and explicit
acceptance before GitHub publication. Hosts supporting MCP Apps can also display an inline
run view; every client retains text results and file resource links.
See the MCP connection and authorization guide.
A platform that reviews its own runs
Three background services watch the platform itself. The sentinel watches runs in flight for cost overruns and drifting trajectories. The analyst writes a cited post-mortem verdict for each finished run. The mender turns a verdict that names a code defect into a pull request, which a person reviews and merges. Read the supervisor design.
How it works
atoma assigns planning, supervision and execution to different AI agents and model tiers. Ordinary build runs start with a supervisor and workers; a deeper planning tier takes over if supervision exhausts its retries, and a seeded run keeps its starting workspace when it does.
- Workers build. They read and write files, run commands and use tools.
Project runs do so in a container with no network unless egress is
explicitly allowed; a local
npm run run:builduses the host unless it is given--container. - Supervisors check. They review results against artifact evidence and fixed probes. Before delivery, a separate check reviews the final result against the goal and its acceptance criteria.
- Trust is earned. Components that keep succeeding can skip some model reviews while retaining mechanical checks. A failure revokes that trust.
- Skills carry forward. Verified work becomes reusable recipes. A recipe that can be turned into a script is compiled as soon as it is learned, and the script then runs without model calls until it fails.
The composition model is Element → Molecule → Cell → Tissue: tools, workers, supervisors and planners. Read How atoma works for the architecture, execution boundaries and verification design.
One catalogue, shared by every run. An instance keeps one agent registry, one skill catalogue and one set of trust counters, and every run reads and writes them, whichever organisation started it. What one team's run works out is offered to the next team's run. Projects, workspaces, traces and searchable documents stay scoped to their organisation. This is the design, and it has a price: prompts and recipes a run writes, including wording derived from a document it was given, are readable by other organisations' runs. An instance therefore suits teams that accept pooling what their runs learn. The hosted service states this in its shared-learning terms.
Install and evaluate it locally
For the web experience, start at atoma.run. For a source checkout, use the pinned Node version and follow the development setup guide, including system prerequisites. Runs and the full test suite require macOS or Linux; on Windows, use WSL2 with its own checkout on ext4.
git clone https://github.com/atoma-run/atoma.git cd atoma nvm install && nvm use npm ci npm run release:check npm run doctor
Configure your model providers using .env.example and the
development guide, then run a task and open the
console:
npm run run:build -- "a Node CLI that converts CSV to JSON" npm run viz:serve
The compiled commands read the process environment; they do not load .env.
The local console is open on loopback by default. Organisation-scoped project
runs additionally require Docker and a Haystack search runtime, described in
the development setup guide.
A fresh checkout contains no learned state.
To host an instance for others, follow the packaged stack,
deployment, GitHub App
and preview guides, and back the state up
off-machine with npm run backup -- --dest <mount>.
Status
atoma is an evolving open-source system. Its web console, project runs, acceptance criteria, comparison reruns, GitHub import and publication, result previews and MCP endpoint are in use on atoma.run.
Local file-tool containment is not shell isolation; use the container backend for isolated execution. A platform admin can read across organisations, and mutually untrusted tenants are not a supported deployment shape. Verification provides evidence for review, not a guarantee that a generated application is ready for production. See the changelog for what changed.
Repository facts
| Read out of this checkout | |
|---|---|
| Version | 0.4.0 |
| Node | 24.20+ (.nvmrc 24.20.0, engines >=24) |
| Subsystems under their own contract | 18 |
| MCP tools | 58 |
| Curated agent names | 118 molecules · 40 cells · 20 tissues |
| Controlled benchmark rounds | 12 (benchmark/RESULT.md + ROUND<n>.md) |
| Interface locales | 13 catalogs — 1 source, 12 translated |
Documentation
Browse the documentation index for current guides and the archive for historical designs, reviews and release evidence.
| I want to… | Read |
|---|---|
| Understand the architecture | How it works |
| Understand Jev and its evaluation | Architecture · Decision record · Latest policy corrections |
| Know what runs share with each other | Shared-learning terms |
| Use your own ChatGPT account | Personal model discovery |
| Develop locally or contribute | Development setup · Contributing |
| Operate a hosted instance | Packaged stack · Deployment · Maintenance · Configuration |
| Publish results or enable previews | GitHub App · Preview deployment |
| Connect an MCP client | MCP authorization |
| Review changes | Changelog · Code reviews |
| Report a vulnerability | Security policy |
Historical measurements
Twelve controlled rounds explored build and maintenance tasks against a single agent — a frontier model, and in later rounds cheaper Sonnet and Haiku agents. Results were mixed: some comparisons favoured atoma, while cheaper direct models matched or outperformed it on the tested maintenance tasks. They predate the 2026-08-18 state reset, so they do not establish savings or correctness for the current release. Read the protocol and the results for context.
License
atoma is free and open-source software under the
GNU Affero General Public License, version 3 (AGPL-3.0-only).
If you distribute a modified version, or run one that users interact with over
a network, you must offer those users its source under the same licence.
Unmodified use, including internal production use and hosting, carries no
obligation beyond keeping the notices. A commercial licence is available from
the author for organisations that cannot accept the AGPL; contributors grant
the rights that make this possible through the CLA, which also
commits the project to remaining under an OSI-approved licence.
Contributions start with CONTRIBUTING.md. Vulnerabilities
go through SECURITY.md, not the issue tracker. The hosted
service at atoma.run publishes its
shared-learning service terms and operator contact
separately from the software licence.
Model providers are called with the credentials you supply, under each
provider's own terms. The @anthropic-ai/claude-agent-sdk dependency is
distributed by Anthropic under its own licence, and the 3D assets under
src/viz/public/ carry their CC0 and CC-BY-4.0 notices beside the files.
Copyright 2026 Matthieu Foillard.
Facts
- Kind
- MCP server
- Repo
- atoma-run/atoma
- Group
- Uncategorized
- Stars
- 20
- License
- AGPL-3.0
- Language
- TypeScript
- Last push
- 2026-10-11
- Forks
- 2
- MCP Registry
- run.atoma/atoma
- Homepage
- atoma.run
- Topics
- agent-orchestration, agpl, ai-agents, llm-agents, mcp, sandbox, typescript, cost-optimization, jev, typesafe
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