ClaudeCodeMod

All shelves / MCP servers

Ontology Atlas

io.github.wlsdks/ontology-atlas · 143 stars · TypeScript · MIT

MCP server Read and write one codebase ontology kept as Markdown in the repository.

Install

The repo has no one-line install. Follow its README.

Published as

  • mcpbhttps://github.com/wlsdks/ontology-atlas/releases/download/v1.2.0/ontology-atlas-mcp-0.13.0.mcpbstdio

From the server's entry in the official MCP Registry.

Open the repo

Configuration

NameSet asWhat it is
OATLAS_VAULTOptionalEnv varThe Markdown folder that holds the ontology — normally atlas/ inside the repository it describes.

Files

README.md

English | 한국어 | 日本語 | 简体中文

Understand your system as AI agents change its code.

A map of what your code does and why, kept as Markdown in your repository
and read by both you and your coding agent.

Download for macOS · Try it in the browser · Guide

MIT license Latest release Listed on mcpservers.org

The Ontology Atlas macOS app with the Online Store project selected: its domains named around it, everything unrelated receding, and the inspector showing the project record and its code-evidence state

Why

Coding agents now change code faster than a team can keep a picture of it in their heads. Atlas keeps that picture beside the code: what each part is for, which files implement it, what depends on what, and what nobody knows yet. Your agent reads it before a task and proposes updates after; you keep, correct or reject each change as a Markdown diff.

  • Your agent starts with context. Claude Code, Codex, Cursor and Antigravity read the concepts, code paths, dependencies and open questions a task touches, over MCP.
  • You own the record. One Markdown file per concept in an atlas/ folder, versioned and reviewed in Git like the code.
  • You decide what is true. Agent proposals stay proposals until you accept them.
  • It says what it does not know. A line on the map is a declared relationship, not proof of runtime impact; missing evidence shows as unknown, never as safe. Compact task handoffs preserve whole uncertainty statements or report omissions with the document reads needed to inspect them. Initial analysis also excludes literal Markdown examples and marks truncated document evidence for review with a hash-bound original-source follow-up. Task matching and navigation use authored evidence; code examples, hidden comments and blockquotes cannot supply capability claims or work coordinates.

See it

Projects: each project with its domains, capabilities and code-evidence state
Projects — every project and how much of it has code evidence.
Library: sources on the left, the wiki pages written from them, and the concepts those pages name
Library — documents in, cited wiki pages out.
Git: an unsaved concept change with its exact Markdown diff
Git — the exact Markdown diff before you save.
Insights: measurements above, the things to fix grouped by kind below
Insights — what to fix next, by measurement, not a score.
Harness: what the repository tells, blocks and watches for its coding agents
Harness — what your repository tells, blocks and watches for agents.
Automations: scheduled checks that keep the folder current
Automations — scheduled checks that keep the folder current.

Quick start

  1. Install the app from the download page, or open the browser version.
  2. Open a folder. Atlas reads its Markdown in place, or starts an atlas/ folder in your repository, and shows the path before it writes anything.
  3. Connect your agent. In Agents › MCP, press Connect for your tool, restart the agent, and ask about your next task.

macOS (Apple Silicon) is signed and notarized and carries the MCP server inside the app. Windows x64 is an unsigned beta. On Linux, use the browser version or run the CLI and MCP server from a source checkout. Releases list each version's files and checksums.

How it works

your-repo/
├── src/
└── atlas/                 ← cloned, branched and reviewed with the code
    ├── project.md
    ├── domains/  capabilities/  elements/
    ├── sources/           documents kept exactly as they arrived
    └── wiki/              pages written from those sources, every fact cited

A Markdown file whose frontmatter has kind: is one concept. Its uid never changes, its slug is its current address, and its path names the code it describes. The map, documents, Library, Insights and Git screens all read these files.

Your agent reaches the folder two ways:

  • MCP: the agent starts the Atlas MCP server, which reads and writes the folder on disk, even with the app closed. Connect an agent · MCP reference
  • ACP: Claude Agent and Codex also run in the app's own chat; each write waits until you allow it. Agents

A project's source-path repair opens the affected concept and recorded relative path; stale or missing targets require remeasurement.

Analysis compares recorded dependencies between responsibilities, then opens the exact concepts and declaring document beside the selected claim. Implementation records, unchecked source and missing explanations stay distinct. In the macOS app, documents and cited files can be dated in their respective bound Git repositories; missing access or history stays unknown, and a folder chosen for reading must match the existing connection. Analysis

Local-first

  • No backend, account or telemetry. The folder stays plain Markdown on your disk.
  • Model calls with your API key or a local model are opt-in, and each records its destination in .ontology-atlas/llm-audit.jsonl.
  • A connected coding agent may send your prompt and what it reads to its own provider; Atlas's log does not cover those transfers.

Trust · Security

Status

Atlas is early. Our benchmark has not yet shown better answers with Atlas, and Atlas was slower (the correction). Construction trials, their failures and limits are in the construction measurements.

Documentation

What is Atlas? · First five minutes · What becomes a node? · Relations · Specification · Features · CLI · Architecture

Contributing

Read CONTRIBUTING.md; external pull requests come from forks. AGENTS.md is the contract for people and agents alike.

pnpm install
pnpm dev
pnpm checks:changed -- --run

pnpm pr:land <number> merges a reviewed pull request and keeps its original commits. Development checks is the full gate reference.

Pre-push checks the commit being pushed and runs affected lint, unit and Node tests in parallel with the relevant cheap checks. CI owns browser, full contract and dependency-graph verification. Test-only edits to CI tooling run their regressions without starting unrelated product suites; changes to the planner implementation still require exhaustive CI.

Repository commands
Command What it answers
node scripts/run-playwright-ci.mjs --help Browser shard options, without discovering or running tests; unknown options fail before execution
pnpm agents:check Each harness's instruction files are valid; Codex and Claude files need not match
pnpm brief:new -- --slug=<slug> --owns=<path,...> A delegation brief with the port, scratch, checks and merge lines filled in
pnpm build:static The static export in out/, rebuilt only when a build input changed since the last build
pnpm bundle:plan · pnpm bundle:prune Plan merging several branches as one, then prune the branches main contains (/merge)
pnpm checks:changed Which gates this change needs
pnpm conflicts:scan Which open pull requests change the same files as this branch, and whether a trial merge conflicts
pnpm decisions:find <terms> · pnpm decisions:check The decision to cite or overturn, and whether this change owes one
pnpm design:tokens -- [--prefix=<name>] The current token ramps, resolved from app/styles
pnpm doc:new -- --type=<kind> --area=<area> --slug=<slug> A new living document from its template in docs/.templates/
pnpm docs:check Docs gates, including pnpm docs:language, pnpm source:language, pnpm changelog:check, pnpm dev-checks:check, pnpm docs:meta
pnpm docs:meta · pnpm doc:history -- <path> Every living document's kind, status and area; one document's commits across moves
pnpm docs:move Moves the documents in docs/.moved.json and rewrites references (-- --check only reports)
pnpm e2e:durations -- <timings dir> Rebalances the browser shards from downloaded playwright-timings-* reports
pnpm e2e:sleeps:check Refuses a new fixed waitForTimeout without a // measurement window: note
pnpm gates:yield -- --runs=200 Which CI checks ever failed, per run, from the lane reports CI uploads
pnpm gateway:capture -- --base-url=<static export> Re-shoots the six app screens on the download page, in Korean and English
pnpm harness:tokens -- --since=<date> Where Claude Code tokens went per agent type, from local transcripts, and which runs broke the compaction window or turn caps (budget)
pnpm knip Dead files, exports and types
pnpm licenses:check · pnpm notice:build · pnpm notice:check Shipped packages are on the license allow-list, and NOTICE.md is current (rules)
pnpm messages:build · pnpm messages:check · pnpm messages:adopt Compose messages/<locale>.json from one file per namespace, prove it current, and carry an old branch's edits
pnpm messages:coverage -- --locale <code> Checks one locale's strings against en: arguments, plurals, script, keep-terms and typography
pnpm perf:mcp:memory · pnpm perf:mcp:memory:check Whether the MCP server releases memory across repeated calls; about a minute
pnpm pr:ci <n> Fire CI on a draft now
pnpm pr:land --plan <n...> · pnpm pr:land --conduct Dry-run a merge, or merge queued pull requests until the queue is empty
pnpm pr:land <n> · pnpm pr:queue Queue a pull request to merge (green ones merge together behind one CI run), and show the queue
pnpm review:facts -- --base=<ref> The mechanical facts a reviewer would otherwise count by hand: line growth, 800-line files, export and dependency changes, untouched sibling tests, security paths
pnpm seo:check After pnpm build: every sitemap URL in out/ canonicalizes to itself, / and each locale root point at /{locale}/download/, and titles and descriptions are unique per locale
pnpm typecheck Types across every file, with Next's generated route and page types
pnpm ui:audit -- --url=<base> --route=<path> Rendered facts per width: horizontal overflow, occluded or unreachable controls, small touch targets, off-ramp type/radius/shadow values, low contrast, unequal repeated sets, scroll-end reserve

License

MIT. Third-party notices are in NOTICE.md, and the full license texts in public/third-party-licenses.txt. The pixel mascot and its sources are described in Brand.

Facts

Kind
MCP server
Repo
wlsdks/ontology-atlas
Group
Uncategorized
Stars
143
License
MIT
Language
TypeScript
Last push
2026-10-11
Forks
21
MCP Registry
io.github.wlsdks/ontology-atlas
Homepage
ontologyatlas.com/en/download
Topics
knowledge-graph, ontology, ai-agents-framework, code-visualization, codebase, coding-agents, developer-tools, impact-analysis, mcp-server, ontology-engineering, ontology-management-framework, software-architecture, claude-code, codex

More on this shelf

  1. 1REAio.github.morluto/reaReverse engineer anything from your terminal or agent with one CLI and MCP server.125.3k
  2. 2com.browser-use/browser-usecom.browser-use/browser-useControl a real Chrome browser to complete any task: fill forms, extract data, book flights.117.7k
  3. 3World Monitorapp.worldmonitor/mcpLive markets, conflicts, country risk, chokepoints, energy, and China decision signals. 93 tools.88.3k
  4. 4Scrapling MCP Serverd4vinci/scrapling🕷️ An adaptive Web Scraping framework that handles everything from a single request to a full-scale crawl! Don't be shy, join here: https://discord.gg/EMgGbDceNQ and follow here for daily tips and tricks: https://x.com/Scraplingdev86.9k
  5. 5Everythingmodelcontextprotocol/serversThis MCP server attempts to exercise all the features of the MCP protocol. It is not intended to be a useful server, but rather a test server for builders of MCP clients. It implements prompts, tools, resources, sampling, and more to showcase MCP capabilities.85.8k
  6. 6Fetchmodelcontextprotocol/serversA Model Context Protocol server that provides web content fetching capabilities. This server enables LLMs to retrieve and process content from web pages, converting HTML to markdown for easier consumption.85.8k