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open-biosciences/open-biosciences-plugins

open-biosciences/open-biosciences-plugins · 1 stars · 2 plugins

Marketplace

Install

In Claude Code
/plugin marketplace add open-biosciences/open-biosciences-plugins

Run inside Claude Code, then install plugins from it. Check the repo's README before you run it.

Open the repo

Plugins 2

After adding the marketplace, install one with /plugin install <name>@open-biosciences-plugins.

  1. 1bio-researchInvestigate biological targets, map protein interactions, and evaluate drug candidates using 12 curated life sciences APIs. Generate evidence-graded reports and BioRxiv-ready manuscripts from a single research question./plugin install bio-research@open-biosciences-plugins
  2. 2psychology-researchRun evidence-grounded psychology research and therapist/provider fit assessment with source hierarchy, claim provenance, clinical-safety guardrails, and evidence-graded reporting./plugin install psychology-research@open-biosciences-plugins

Files

README.md

Open Biosciences Plugins

Connect to structured research workflows, domain-specific skills, and MCP-backed data sources. Use with Cowork or install directly in Claude Code.

This marketplace contains reusable research plugins:

Plugin What It Does
bio-research Connects to preclinical research tools and databases for life sciences R&D
psychology-research Runs evidence-grounded psychology research and therapist/provider fit assessment

Bio Research

MCP Servers (Data Sources & Tools)

If you see unfamiliar placeholders or need to check which tools are connected, see CONNECTORS.md.

Provider What It Does Category/Placeholder
Open Biosciences 34-tool gateway spanning HGNC, UniProt, STRING, BioGRID, ChEMBL, Open Targets, PubChem, IUPHAR, WikiPathways, ClinicalTrials.gov, Ensembl, Entrez biosciences-mcp
Open Biosciences Edge tools: ORCS CRISPR essentiality, ChEMBL mechanism-of-action biosciences-mcp-edge
Sage Bionetworks Collaborative research data management ~~data repository

Skills (Analysis & Research Workflows)

Eleven skills for structured research using life sciences APIs (9 core + 2 beta competency-question skills). These follow a LOCATE→RETRIEVE discipline where entities are resolved through search endpoints before strict lookup by canonical ID. See bio-research/references/fuzzy-to-fact.md for details.

Skill What It Does
biosciences-genomics Gene resolution via HGNC, Ensembl, NCBI Entrez
biosciences-proteomics Protein interactions via UniProt, STRING, BioGRID
biosciences-pharmacology Drug discovery via ChEMBL, PubChem, IUPHAR, Open Targets
biosciences-clinical Disease associations and trial discovery via Open Targets, ClinicalTrials.gov
biosciences-crispr CRISPR essentiality screen validation via BioGRID ORCS
biosciences-graph-builder Orchestrates entity resolution, network expansion, and knowledge graph construction
biosciences-reporting Template-based report formatting with evidence grading
biosciences-reporting-quality-review 10-dimension quality assessment for reports
biosciences-publication-pipeline Publication outputs: report, KG JSON, Synapse grounding, quality review, BioRxiv draft
biosciences-cq-discover (beta) Discover and review competency questions from Hugging Face datasets
biosciences-cq-runner (beta) Execute competency question research and validation pipelines

Commands

Command What It Does
/ob-research Run structured research on a competency question — entity resolution, network expansion, drug/trial discovery
/ob-report Format findings as a report with evidence grading
/ob-review Quality review against 10 evaluation dimensions
/ob-publish Generate publication files: report, KG JSON, Synapse grounding, quality review, BioRxiv draft
/ob-cq-discover (beta) Review competency questions in Hugging Face open-biosciences community
/ob-cq-run (beta) Wrapper to do competency question driven research and validation

Getting Started

# Add the marketplace
/plugin marketplace add open-biosciences/open-biosciences-plugins

# Install the plugin
/plugin install bio-research@open-biosciences-plugins

Common Workflows

Graph-Based Research Ask a competency question with /ob-research to resolve entities across databases, build interaction networks, and discover drug candidates and clinical trials. Format results with /ob-report, review with /ob-review, or generate publication files with /ob-publish.

Psychology Research

psychology-research adapts the same grounding discipline to psychology, therapy, and provider-fit workflows. It ships commands, skills, and references plus a publish gate with eight validators. It bundles no MCP servers; connectors come from the session.

Skills

Skill What It Does
psychology-evidence-builder Builds evidence packets for psychology and therapy research using LOCATE -> RETRIEVE -> EXTRACT -> CLASSIFY -> SYNTHESIZE
psychology-provider-fit Verifies provider fit, licensure, credentials, modality claims, geography, telehealth, and gaps
psychology-reporting Formats sourced reports with evidence labels and safety language
psychology-quality-review Reviews reports for source attribution, overclaiming, clinical safety, provider verification, and hallucination risk

Commands

Command What It Does
/psy-research Run evidence-grounded psychology research from a question or document
/psy-provider Verify therapist/provider fit, credentials, modality claims, and gaps
/psy-report Format a sourced report from an evidence packet
/psy-review Quality-review a report and evidence packet
/psy-publish Run the publish gate and emit a bundle (report + evidence packet + manifest + content hash)

Safety

Psychology Research is research support, not therapy, not diagnosis, and not medical advice. It does not diagnose, prescribe, rank a clinician as clinically best, or simulate real clinicians. Crisis/self-harm content routes to 988 and pauses analysis.

Install

/plugin install psychology-research@open-biosciences-plugins

License

Skills are licensed under Apache 2.0. MCP servers are provided by their respective authors — see individual server documentation for terms.

Facts

Kind
Marketplace
Repo
open-biosciences/open-biosciences-plugins
Group
Uncategorized
Stars
1
Marketplace name
open-biosciences-plugins
Owner
open-biosciences
License
MIT
Language
Python
Created
2026-03-02
Last push
2026-09-14
Plugins
2

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