open-biosciences/open-biosciences-plugins
open-biosciences/open-biosciences-plugins · 1 stars · 2 plugins
Marketplace
Install
/plugin marketplace add open-biosciences/open-biosciences-pluginsRun inside Claude Code, then install plugins from it. Check the repo's README before you run it.
Plugins 2
After adding the marketplace, install one with /plugin install <name>@open-biosciences-plugins.
- 1bio-researchInvestigate biological targets, map protein interactions, and evaluate drug candidates using 12 curated life sciences APIs. Generate evidence-graded reports and BioRxiv-ready manuscripts from a single research question.
/plugin install bio-research@open-biosciences-plugins - 2psychology-researchRun evidence-grounded psychology research and therapist/provider fit assessment with source hierarchy, claim provenance, clinical-safety guardrails, and evidence-graded reporting.
/plugin install psychology-research@open-biosciences-plugins
Files
Open Biosciences Plugins
Connect to structured research workflows, domain-specific skills, and MCP-backed data sources. Use with Cowork or install directly in Claude Code.
This marketplace contains reusable research plugins:
| Plugin | What It Does |
|---|---|
| bio-research | Connects to preclinical research tools and databases for life sciences R&D |
| psychology-research | Runs evidence-grounded psychology research and therapist/provider fit assessment |
Bio Research
MCP Servers (Data Sources & Tools)
If you see unfamiliar placeholders or need to check which tools are connected, see CONNECTORS.md.
| Provider | What It Does | Category/Placeholder |
|---|---|---|
| Open Biosciences | 34-tool gateway spanning HGNC, UniProt, STRING, BioGRID, ChEMBL, Open Targets, PubChem, IUPHAR, WikiPathways, ClinicalTrials.gov, Ensembl, Entrez | biosciences-mcp |
| Open Biosciences | Edge tools: ORCS CRISPR essentiality, ChEMBL mechanism-of-action | biosciences-mcp-edge |
| Sage Bionetworks | Collaborative research data management | ~~data repository |
Skills (Analysis & Research Workflows)
Eleven skills for structured research using life sciences APIs (9 core + 2 beta competency-question skills). These follow a LOCATE→RETRIEVE discipline where entities are resolved through search endpoints before strict lookup by canonical ID. See bio-research/references/fuzzy-to-fact.md for details.
| Skill | What It Does |
|---|---|
| biosciences-genomics | Gene resolution via HGNC, Ensembl, NCBI Entrez |
| biosciences-proteomics | Protein interactions via UniProt, STRING, BioGRID |
| biosciences-pharmacology | Drug discovery via ChEMBL, PubChem, IUPHAR, Open Targets |
| biosciences-clinical | Disease associations and trial discovery via Open Targets, ClinicalTrials.gov |
| biosciences-crispr | CRISPR essentiality screen validation via BioGRID ORCS |
| biosciences-graph-builder | Orchestrates entity resolution, network expansion, and knowledge graph construction |
| biosciences-reporting | Template-based report formatting with evidence grading |
| biosciences-reporting-quality-review | 10-dimension quality assessment for reports |
| biosciences-publication-pipeline | Publication outputs: report, KG JSON, Synapse grounding, quality review, BioRxiv draft |
| biosciences-cq-discover | (beta) Discover and review competency questions from Hugging Face datasets |
| biosciences-cq-runner | (beta) Execute competency question research and validation pipelines |
Commands
| Command | What It Does |
|---|---|
/ob-research |
Run structured research on a competency question — entity resolution, network expansion, drug/trial discovery |
/ob-report |
Format findings as a report with evidence grading |
/ob-review |
Quality review against 10 evaluation dimensions |
/ob-publish |
Generate publication files: report, KG JSON, Synapse grounding, quality review, BioRxiv draft |
/ob-cq-discover |
(beta) Review competency questions in Hugging Face open-biosciences community |
/ob-cq-run |
(beta) Wrapper to do competency question driven research and validation |
Getting Started
# Add the marketplace
/plugin marketplace add open-biosciences/open-biosciences-plugins
# Install the plugin
/plugin install bio-research@open-biosciences-plugins
Common Workflows
Graph-Based Research
Ask a competency question with /ob-research to resolve entities across databases, build interaction networks, and discover drug candidates and clinical trials. Format results with /ob-report, review with /ob-review, or generate publication files with /ob-publish.
Psychology Research
psychology-research adapts the same grounding discipline to psychology, therapy, and provider-fit workflows. It ships commands, skills, and references plus a publish gate with eight validators. It bundles no MCP servers; connectors come from the session.
Skills
| Skill | What It Does |
|---|---|
| psychology-evidence-builder | Builds evidence packets for psychology and therapy research using LOCATE -> RETRIEVE -> EXTRACT -> CLASSIFY -> SYNTHESIZE |
| psychology-provider-fit | Verifies provider fit, licensure, credentials, modality claims, geography, telehealth, and gaps |
| psychology-reporting | Formats sourced reports with evidence labels and safety language |
| psychology-quality-review | Reviews reports for source attribution, overclaiming, clinical safety, provider verification, and hallucination risk |
Commands
| Command | What It Does |
|---|---|
/psy-research |
Run evidence-grounded psychology research from a question or document |
/psy-provider |
Verify therapist/provider fit, credentials, modality claims, and gaps |
/psy-report |
Format a sourced report from an evidence packet |
/psy-review |
Quality-review a report and evidence packet |
/psy-publish |
Run the publish gate and emit a bundle (report + evidence packet + manifest + content hash) |
Safety
Psychology Research is research support, not therapy, not diagnosis, and not medical advice. It does not diagnose, prescribe, rank a clinician as clinically best, or simulate real clinicians. Crisis/self-harm content routes to 988 and pauses analysis.
Install
/plugin install psychology-research@open-biosciences-plugins
License
Skills are licensed under Apache 2.0. MCP servers are provided by their respective authors — see individual server documentation for terms.
{
"name": "open-biosciences-plugins",
"owner": {
"name": "open-biosciences"
},
"metadata": {
"description": "Research plugins for evidence-grounded life sciences, psychology, therapy, and provider-fit workflows."
},
"plugins": [
{
"name": "bio-research",
"source": "./bio-research",
"description": "Investigate biological targets, map protein interactions, and evaluate drug candidates using 12 curated life sciences APIs. Generate evidence-graded reports and BioRxiv-ready manuscripts from a single research question."
},
{
"name": "psychology-research",
"source": "./psychology-research",
"description": "Run evidence-grounded psychology research and therapist/provider fit assessment with source hierarchy, claim provenance, clinical-safety guardrails, and evidence-graded reporting."
}
]
}Facts
- Kind
- Marketplace
- Repo
- open-biosciences/open-biosciences-plugins
- Group
- Uncategorized
- Stars
- 1
- Marketplace name
- open-biosciences-plugins
- Owner
- open-biosciences
- License
- MIT
- Language
- Python
- Created
- 2026-03-02
- Last push
- 2026-09-14
- Plugins
- 2
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